gatk3的最后一个经典版本3.8

Guillermo del Angel d2499bcc33 Cleaning up and institutionalizing several local hacks to ValidationSiteSelector: add argument to ignore polymorphic status in VC (useful when we want to intentionally select monomorphic sites), add dummy NullSampleSelector class that should be used if we really don't want to do any sample selection, and enabled sampleMode=NONE for this purpose.		2011-11-23 09:14:10 -05:00
public	During flanking interval creation merging overlapping flanks so that on scatter the list doesn't accidentally genotype the same site twice.	2011-11-17 13:56:42 -05:00
settings	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
ivy.xml	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00