gatk3的最后一个经典版本3.8

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Mauricio Carneiro d1febb89c8 Better documentation for ReadClippingStats walker * add overall walker GATKDocs * add explanation for skip parameter and make it advanced * reverse the logic on exculding unmapped reads for clarity * fix read length calculation to no longer include indels ps: I am not sure how useful this walker is (I didn't write it) but the skip logic is poor and calculates the entire statistic for the reads it is eventually going to skip. This would be an easy fix, but only worth our time if people actually use this.		2014-01-01 14:26:26 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Don't fail in annotations if the wrong tools are calling them, just silently skip them.	2013-12-31 23:45:21 -05:00
public	Better documentation for ReadClippingStats walker	2014-01-01 14:26:26 -05:00
settings	Updating variant jar.	2013-12-31 22:48:29 -05:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Separate tests that access the knowledge base from other tests	2013-12-06 11:31:35 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit