Mark DePristo d1e70d6ec2 Removed Nx counting of reads in metrics with -nt > 1		2011-10-06 18:29:26 -07:00
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alignment	Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-07-19 20:25:33 -04:00
analyzecovariates	Updating Rscript path doc text for Broad users	2011-09-21 15:22:26 -04:00
commandline	Patch from Laurent: typo leads to bad error messages.	2011-09-12 14:45:53 -04:00
gatk	Removed Nx counting of reads in metrics with -nt > 1	2011-10-06 18:29:26 -07:00
jna	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00
pipeline	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
queue	Fixed Queue's tagging of RodBindings.	2011-08-21 02:34:20 -04:00
utils	GATK read group requirement iron hand	2011-10-06 08:40:35 -07:00