kiran 5cdc5dffc6 Added some code to handle pairs properly, extend IC solution beyond IC reference length, and allow output to a specified file. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@155 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-23 19:42:31 +00:00
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gatk	Now works on single samples and computes metrics.	2009-03-22 15:45:12 +00:00
illumina	Added some code to handle pairs properly, extend IC solution beyond IC reference length, and allow output to a specified file.	2009-03-23 19:42:31 +00:00
indels	fixing accidental incomplete commit	2009-03-23 14:39:15 +00:00
projects/fourbasecaller	Added some code to handle pairs properly, extend IC solution beyond IC reference length, and allow output to a specified file.	2009-03-23 19:42:31 +00:00
utils	Moved to core	2009-03-22 20:02:19 +00:00
ValidateSAM.java	optionally check that the records are sorted.	2009-03-22 15:36:24 +00:00