Mark DePristo 734756d6b2 Final fixes before BCF2 mark III push ... -- Added MLEAC and MLEAF format lines to PoolCallerWalker -- VariantFiltrationWalker now throws an error when JEXL variables cannot be found (XXX < 0.5) but passes through (albeit with a disgusting warning) when a variable is found but its value is a bad type (AF < 0.5) where AF == [0.04,0.00] at multi-allelic variation -- Allow values to pass assertEquals in VariantContextTestProvider when one file contains X=[null, null] and the other has X missing		2012-06-21 15:17:22 -04:00
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writer	Bugfixes for VCFWriterUnitTest and TestProvider to deal with stricter VCFWriter behavior	2012-06-21 15:16:26 -04:00
AlleleUnitTest.java	…
GenotypeLikelihoodsUnitTest.java	…
GenotypeUnitTest.java	Cleanup Genotypes	2012-06-14 16:42:36 -04:00
GenotypesContextUnitTest.java	…
VCFJarClassLoadingUnitTest.java	…
VariantContextBenchmark.java	Cleanup Genotypes	2012-06-14 16:42:36 -04:00
VariantContextTestProvider.java	Final fixes before BCF2 mark III push	2012-06-21 15:17:22 -04:00
VariantContextUnitTest.java	…
VariantContextUtilsUnitTest.java	…
VariantJEXLContextUnitTest.java	…