gatk3的最后一个经典版本3.8

Mark DePristo d1511e38ad Removing ConstrainedAFCalculationModel; AFCalcPerformanceTest ... -- Superceded by IndependentAFCalc -- Added support to read in an ExactModelLog in AFCalcPerformanceTest and run the independent alleles model on it. -- A few misc. bug fixes discovered during running the performance test		2012-10-16 08:11:06 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Removing ConstrainedAFCalculationModel; AFCalcPerformanceTest	2012-10-16 08:11:06 -04:00
public	Removing ConstrainedAFCalculationModel; AFCalcPerformanceTest	2012-10-16 08:11:06 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00