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gatk-3.8/java/src/org/broadinstitute/sting/playground/utils
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andrewk 30babbf5b9 Restructured AlleleFrequencyMetricsWalker to correctly report Hapmap concordance numbers for genotyping and added reporting for Hapmap reference/variant calling. Also, tiny bugfix in interval code. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@181 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-03-25 01:12:05 +00:00
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AlleleFrequencyEstimate.java Restructured AlleleFrequencyMetricsWalker to correctly report Hapmap concordance numbers for genotyping and added reporting for Hapmap reference/variant calling. Also, tiny bugfix in interval code. 2009-03-25 01:12:05 +00:00
CountedObject.java Push core / playground lower into the tree. 2009-03-23 23:19:54 +00:00
CountedObjectComparatorAdapter.java Push core / playground lower into the tree. 2009-03-23 23:19:54 +00:00
Interval.java Push core / playground lower into the tree. 2009-03-23 23:19:54 +00:00
SimpleInterval.java Push core / playground lower into the tree. 2009-03-23 23:19:54 +00:00
WhitespaceTextFileParser.java Push core / playground lower into the tree. 2009-03-23 23:19:54 +00:00