Joel Thibault d0cf8bcc80 Add unit tests for VariantContextBuilder.rmAttribute() and .attribute() ... * These generated NPEs when the attribute object is null		2012-06-25 12:05:04 -04:00
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alignment	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
commandline	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
gatk	Bug fix in MLEAC calculation for when the exact model says the greedy AC of the alternate allele is zero.	2012-06-22 12:38:48 -04:00
jna	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
utils	Add unit tests for VariantContextBuilder.rmAttribute() and .attribute()	2012-06-25 12:05:04 -04:00
BaseTest.java	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
MD5DB.java	Finalizing BCF2 mark III commit	2012-06-21 15:16:27 -04:00
MD5Mismatch.java	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00