gatk-3.8/packages/GenomeAnalysisTK.xml

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1.1 KiB
XML

<?xml version="1.0" encoding="UTF-8"?>
<package>
<name>GenomeAnalysisTK</name>
<main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
<dependencies>
<class>org.broadinstitute.sting.gatk.walkers.DepthOfCoverageWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.PileupWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.PrintReadsWalker</class>
</dependencies>
<resources>
<file>java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/walkers/PileupWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/examples/HelloWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/examples/build.xml</file>
<file>testdata/exampleBAM.bam</file>
<file>testdata/exampleBAM.bam.bai</file>
<file>testdata/exampleFASTA.fasta</file>
<file>testdata/exampleFASTA.fasta.fai</file>
<file>testdata/exampleFASTA.dict</file>
</resources>
</package>