ebanks d0ca6f8a9c Patch for case that a read spans only an insertion (i.e. no Ms in the CIGAR string): the end position should not be less than the start position (which is how Picard defines it) but instead should be equal to it. This is just a patch; we'll get a proper solution in at some point. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5922 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-02 20:40:56 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Patch for case that a read spans only an insertion (i.e. no Ms in the CIGAR string): the end position should not be less than the start position (which is how Picard defines it) but instead should be equal to it. This is just a patch; we'll get a proper solution in at some point.	2011-06-02 20:40:56 +00:00
test	Stop running away from my commits, test modules.	2011-06-02 13:05:53 +00:00