gatk3的最后一个经典版本3.8

Mauricio Carneiro d0c8105387 Cleaning up hilarious exception messages ... Too many users (with RNASeq reads) are hitting these exceptions that were never supposed to happen. Let's give them (and us) a better and clearer error message.		2013-03-04 16:52:22 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Merged bug fix from Stable into Unstable	2013-03-04 12:36:04 -05:00
public	Cleaning up hilarious exception messages	2013-03-04 16:52:22 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Ant target to package a GATK jar with private included	2013-03-01 15:33:59 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00