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.gitignore
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1. Enabled FTZ in LoadTimeInitializer.cc
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2014-02-06 11:01:33 -08:00 |
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JNI_README
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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LoadTimeInitializer.cc
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1. Split main JNI function into initializeTestcases, compute_testcases
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2014-02-06 14:35:32 -08:00 |
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LoadTimeInitializer.h
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1. Split main JNI function into initializeTestcases, compute_testcases
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2014-02-06 14:35:32 -08:00 |
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Makefile
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Merge branch 'test_branch'
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2014-02-06 11:18:18 -08:00 |
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Sandbox.cc
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1. Enabled FTZ in LoadTimeInitializer.cc
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2014-02-06 11:01:33 -08:00 |
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Sandbox.h
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1. Enabled FTZ in LoadTimeInitializer.cc
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2014-02-06 11:01:33 -08:00 |
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Sandbox.java
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1. Enabled FTZ in LoadTimeInitializer.cc
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2014-02-06 11:01:33 -08:00 |
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Sandbox_JNIHaplotypeDataHolderClass.h
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1. Enabled FTZ in LoadTimeInitializer.cc
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2014-02-06 11:01:33 -08:00 |
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Sandbox_JNIReadDataHolderClass.h
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1. Enabled FTZ in LoadTimeInitializer.cc
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2014-02-06 11:01:33 -08:00 |
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avx_function_instantiations.cc
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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baseline.cc
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Matrices in baseline C++ (no vector) implementation of PairHMM are now
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2014-02-07 23:22:05 -08:00 |
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define-double.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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define-float.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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define-sse-double.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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define-sse-float.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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headers.h
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1. Split main JNI function into initializeTestcases, compute_testcases
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2014-02-06 14:35:32 -08:00 |
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jni_common.h
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1. Split main JNI function into initializeTestcases, compute_testcases
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2014-02-06 14:35:32 -08:00 |
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jnidebug.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.cc
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc
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1. Split main JNI function into initializeTestcases, compute_testcases
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2014-02-06 14:35:32 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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pairhmm-1-base.cc
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Minor: added support in C++ sandbox to choose implementation and check
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2014-02-09 18:05:35 -08:00 |
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pairhmm-template-kernel.cc
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Adding comments to pairhmm-template-kernel
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2014-02-06 20:13:06 -08:00 |
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pairhmm-template-main.cc
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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run.sh
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Modified run.sh
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2014-01-27 14:56:46 -08:00 |
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shift_template.c
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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sse_function_instantiations.cc
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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template.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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utils.cc
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Minor: added support in C++ sandbox to choose implementation and check
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2014-02-09 18:05:35 -08:00 |
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utils.h
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Minor: added support in C++ sandbox to choose implementation and check
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2014-02-09 18:05:35 -08:00 |
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vector_defs.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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vector_function_prototypes.h
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Moved vector JNI code to public/c++/VectorPairHMM
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2014-01-27 14:52:59 -08:00 |
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