depristo 0f43b10c39 Optimization in CombineVariants when merging into a sites_only VCF ... VariantContextUtils now was a utility function that creates a sitesOnlyVariantContext from an input VC Add complex merge test of SNPs and indels from the new batch merge wiki in : http://www.broadinstitute.org/gsa/wiki/index.php/Merging_batched_call_sets with multiple alleles for an indel. Created a BatchMergeIntegrationTest that uses GGA with the complex merged input alleles to genotype SNPs and Indels with multiple alleles simultaneously in NA12878. Looks great. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5959 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-08 14:31:46 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Optimization in CombineVariants when merging into a sites_only VCF	2011-06-08 14:31:46 +00:00
test	Optimization in CombineVariants when merging into a sites_only VCF	2011-06-08 14:31:46 +00:00