depristo d01d4fdeb5 Optimized version of produce beagle tool, along with experimental (hidden) support for combining likelihoods depending on estimate false positive rate. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5430 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-12 02:06:28 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Optimized version of produce beagle tool, along with experimental (hidden) support for combining likelihoods depending on estimate false positive rate.	2011-03-12 02:06:28 +00:00
test	A better output for Genotype Concordance summary. Now does only % comp hom-ref called hom-ref, het called het, and hom-var called hom-var, which are the quantities we typically show in slides. Updated intergration tests to reflect this change.	2011-03-12 02:03:48 +00:00