gatk3的最后一个经典版本3.8

Mauricio Carneiro d004bfbe6f walker to calculate per base coverage distribution ... -- Base distribution optionally includes deletions -- Implemented an optional filtered coverage distribution option -- Integration tests added for every feature of the traversal This walker is specially fast for the task due to the ability to calculate uncovered bases without having to visit the loci. This capability should be made generic in the future for the advantage of DiagnoseTargets and DepthOfCoverage. GSATDG-45 #resolve		2013-02-07 16:33:05 -05:00
licensing	Added distance across contigs calculation to GenomeLocs	2013-02-07 16:31:41 -05:00
protected/java	walker to calculate per base coverage distribution	2013-02-07 16:33:05 -05:00
public	Added distance across contigs calculation to GenomeLocs	2013-02-07 16:31:41 -05:00
settings	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00