gatk-3.8/java/src/org/broadinstitute/sting/gatk/datasources
aaron 622554d7bd disable a part of the ROD for Reads code until the rest of the system goes live
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2896 348d0f76-0448-11de-a6fe-93d51630548a
2010-02-26 16:15:42 +00:00
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providers RODs for reads phase 2: modified RODRecordList to implement List<ReferenceOrderedDatum> so I could stub it out for testing, added a FlashBackIterator which is needed to prevent the ResourcePool from opening infinity+1 iterators, and some other interfaces to make unit testing much smoother. 2010-02-25 22:48:55 +00:00
shards Initial refactoring of read traversal to make it easier to drop in intervalled reads traversal. 2010-02-26 15:09:09 +00:00
simpleDataSources disable a part of the ROD for Reads code until the rest of the system goes live 2010-02-26 16:15:42 +00:00
BAMFileStat.java Basic use cases for merging BAM files with the new sharding system work. 2010-02-09 22:14:37 +00:00
DataSourceGenerationException.java Changed dataSources to datasources, to be consistant with the rest of our package names. Also, this makes me champion in the largest check-in contest. 2009-06-11 18:13:22 +00:00
package-info.java Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file 2009-12-04 20:08:41 +00:00