gatk-3.8/java/src/org/broadinstitute/sting/oneoffprojects
aaron 0513690416 two fixes in the new cached DbSNP code:
-isBiallelic would incorrectly say triallelic sites are biallelic.
-getAlternateAlleleList was broken, since the new cached list is immutable, we couldn’t remove list items.

Also added a dbSNP validating walker to the one-offs, for testing the new b37 130 dbSNP rod.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2568 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-13 00:27:34 +00:00
..
multisamplecaller Move MSG - plus now obsolete classes which it depends on -- to oneoffprojects (with permission from Jared). 2009-12-02 20:04:22 +00:00
walkers two fixes in the new cached DbSNP code: 2010-01-13 00:27:34 +00:00