aaron cfbd9332b0 small cleanups for the GATK paper genotyper; switched to the managed output system. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2156 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-25 08:04:13 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	small cleanups for the GATK paper genotyper; switched to the managed output system.	2009-11-25 08:04:13 +00:00
test/org/broadinstitute/sting	Don't have the spanning deletions argument be a hard cutoff, but instead be a percentage of the reads in the pileup. Default is now 5% of reads.	2009-11-25 04:54:44 +00:00