cf75caf653
VariantEvalWalker's logger is made public, so that variant eval modules can access it through the parent object. DesignFileGenerator comment lists how best to bind things to it, and the feature accessor is better refined to grab the genome loc. (old change) scala changes: convenience addAll( List[CommandLineFunction] ) added to QScript class (and thus removed from the fCPV2) useful command line functions added to a new library package for command line functions (these are fast simple VCF command lines) bug fixed in ProjectManagement for the class where there's only one batch to be batch-merged (not really part of the use-case, but an edge-condition that came up during pipeline testing) first draft of a private mutations pipeline which will be elaborated in future git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4823 348d0f76-0448-11de-a6fe-93d51630548a |
||
|---|---|---|
| .. | ||
| qscript | ||
| src | ||
| test/org/broadinstitute/sting/queue | ||