gatk-3.8

History

Ryan Poplin 2e5f9db758 Raising per-sample limits on the number of reads in ART and HC. -- Active Region Traversal was using per sample limits on the number of reads that were too low, especially now that we are running one sample at a time. This caused issues with high confidence variants being dropped in high coverage data. -- HaplotypeCallerGVCFIntegrationTest PL/annotation changes due to using more reads in those tests -- Removed a CountReadsInActiveRegionsIntegrationTest test for excessive coverage because the read coverage no longer goes over the limits in ART	2015-01-09 11:21:42 -05:00
..
src	Raising per-sample limits on the number of reads in ART and HC.	2015-01-09 11:21:42 -05:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

Ryan Poplin 2e5f9db758 Raising per-sample limits on the number of reads in ART and HC.

-- Active Region Traversal was using per sample limits on the number of reads that were too low, especially now that we are running one sample at a time. This caused issues with high confidence variants being dropped in high coverage data.
-- HaplotypeCallerGVCFIntegrationTest PL/annotation changes due to using more reads in those tests
-- Removed a CountReadsInActiveRegionsIntegrationTest test for excessive coverage because the read coverage no longer goes over the limits in ART

2015-01-09 11:21:42 -05:00

src

Raising per-sample limits on the number of reads in ART and HC.

2015-01-09 11:21:42 -05:00

pom.xml

Faster builds, with updates to documentation generation.

2014-11-05 00:32:23 +08:00