ebanks cf303810d3 VCF reader now creates the correct type of header line for each header type ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2423 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-21 20:39:06 +00:00
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alignment	Help system content for the alignment module.	2009-12-11 16:01:25 +00:00
analyzecovariates	Updated AnalyzeCovariates to extend org.broadinstitute.sting.utils.cmdLine.CommandLineProgram and use the standard argument parsing.	2009-12-11 21:57:18 +00:00
gatk	Check for null platform (even when the read group isn't null) and assign it the default platform if it is	2009-12-21 07:01:41 +00:00
oneoffprojects	The previous commit broke the build, so this is a temporary patch to get it to compile. ConcordanceTruthTable should use enums (esp. now that all of the concordance variables need to be public), but VariantEval will need to be rewritten soon anyways so I'll just push it off until then.	2009-12-20 02:34:41 +00:00
playground	The previous commit broke the build, so this is a temporary patch to get it to compile. ConcordanceTruthTable should use enums (esp. now that all of the concordance variables need to be public), but VariantEval will need to be rewritten soon anyways so I'll just push it off until then.	2009-12-20 02:34:41 +00:00
utils	VCF reader now creates the correct type of header line for each header type	2009-12-21 20:39:06 +00:00