Christopher Hartl 7f3ad25b01 Adding a mode to VariantFiltration to invalidate previously-applied filters to allow complete re-filtering of a VCF. ... T2D VQSR: re-calling now done with appropriate quality settings and using BAQ.		2012-01-19 10:54:48 -05:00
..
R	queueJobReport now compresses PDF when running R 2.13+.	2012-01-10 17:32:30 -05:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Adding a mode to VariantFiltration to invalidate previously-applied filters to allow complete re-filtering of a VCF.	2012-01-19 10:54:48 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Fix edge case for very small VCFs	2012-01-19 00:51:28 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00