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gatk-3.8/public/java/test/org/broadinstitute/sting
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Mark DePristo cebd37609c Finalizing new Genotype object and associated routines 
-- Builder now provides a depreciated log10pError function to make a new GQ value
-- Genotype is an abstract class, with most of the associated functions implemented here and not in the derived Fast and Slow versions
-- Lots of contracts
-- Bugfixes throughout
 		2012-06-14 16:42:25 -04:00
..
alignment Reinitialize random seed in the bwa bindings from the fixed seed stored in the 2011-07-22 13:41:53 -04:00
commandline Added ability to specify arguments in files via -args/--arg_file 2011-10-24 15:58:34 -04:00
gatk Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
jna Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000. 2012-05-29 11:18:22 -04:00
utils Finalizing new Genotype object and associated routines 2012-06-14 16:42:25 -04:00
BaseTest.java Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000. 2012-05-29 11:18:22 -04:00
MD5DB.java Made GQ an int, not a float. Updated VC code and lots of corresponding MD5s 2012-05-28 20:20:05 -04:00
MD5Mismatch.java Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00
StingTextReporter.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
WalkerTest.java First step towards an efficient Genotype object 2012-06-14 16:42:23 -04:00