gatk3的最后一个经典版本3.8

Go to file

Valentin Ruano-Rubio ce8e93fa51 Made the AF prior probability distribution dynamic respect to the total-ploidy (added ploidy accross samples). Changes: -------- * Instead of calculate a fixed log10 prior array with a fix total likelihood we use a new component, the AFPriorProvider to generate the priors for different total plodies on demand; these are cached however so there is no unecessary recompute involved.		2014-09-12 14:23:37 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Made the AF prior probability distribution dynamic respect	2014-09-12 14:23:37 -04:00
public	Moved arguments controlling options in output files into the engine	2014-09-05 21:18:11 -04:00
settings/helpTemplates	changed the GATKDocs format to PHP	2014-08-18 18:04:07 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/