David Roazen af6a897479 Extend on-the-fly sample renaming feature to vcfs ... -Only works with single-sample vcfs -As with bams, the user must provide a file mapping the absolute path to each vcf whose samples are to be renamed to the new sample name for that vcf. The argument is the same as for bams: --sample_rename_mapping_file, and the mapping file may contain a mix of bam and vcf files should the user wish. -It's an error to attempt to remap the sample names of a multi-sample or sites-only vcf -Implemented at the codec level at the instant the vcf header is first read in to minimize the chances of downstream code examining vcf headers/records before renaming occurs. -Integration tests are in sting, unit tests are in picard -Rev picard et. al. to 1.111.1902		2014-04-08 11:07:00 -04:00
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pom.xml	Extend on-the-fly sample renaming feature to vcfs	2014-04-08 11:07:00 -04:00