ebanks 3af4290a49 Added iterator to randomly downsample to a given fraction of the reads. ... Also, updated sort iterator to allow user to input max sorts. Put in placeholder for downsampling to given coverage. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@243 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-01 02:11:13 +00:00
..
DownsampleIterator.java	Added iterator to randomly downsample to a given fraction of the reads.	2009-04-01 02:11:13 +00:00
LocusIterator.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
LocusIteratorByHanger.java	moved a bunch of files over to the logging system. In some cases I ballparked the severity level of an error, so if you see something wrong feel free to make changes.	2009-03-27 13:27:04 +00:00
MergingSamRecordIterator2.java	Removed unnecessary dependence on playground code...	2009-03-27 22:48:51 +00:00
PushbackIterator.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
ReferenceIterator.java	moved a bunch of files over to the logging system. In some cases I ballparked the severity level of an error, so if you see something wrong feel free to make changes.	2009-03-27 13:27:04 +00:00
SamQueryIterator.java	Reorganized GenomeLoc code to more clearly and better use the picard SequenceDictionary information.	2009-03-28 20:37:27 +00:00
SortSamIterator.java	Added iterator to randomly downsample to a given fraction of the reads.	2009-04-01 02:11:13 +00:00
ThreadedIterator.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
VerifyingSamIterator.java	Support for byInterval traversals for Jared. Do not use them.	2009-03-24 20:55:34 +00:00