ebanks 6cc2fa24d5 Added ability to downsample to a particular coverage ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@250 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-01 20:27:06 +00:00
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dataSources	forgot to change the chunks dir to shards before	2009-03-31 20:28:20 +00:00
executive	New type hierarchy for Traversals. There's a new package to hold them (traversals) and an easy system to create new ones. We are now one step closer to supporting the execution manager (a totally non-functional version is included here) that actually executes walkers in parallel using N threads.	2009-03-27 15:40:45 +00:00
iterators	Added iterator to randomly downsample to a given fraction of the reads.	2009-04-01 02:11:13 +00:00
refdata	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
traversals	Added ability to downsample to a particular coverage	2009-04-01 20:27:06 +00:00
walkers	change default onTraversalDone to use the new output streams	2009-04-01 19:50:31 +00:00
GenomeAnalysisTK.java	Added ability to downsample to a particular coverage	2009-04-01 20:27:06 +00:00
LocusContext.java	Added ability to downsample to a particular coverage	2009-04-01 20:27:06 +00:00
WalkerManager.java	Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.	2009-03-30 23:20:55 +00:00