gatk3的最后一个经典版本3.8

Eric Banks ce55ba98f4 Don't try to left align indels in unmapped reads (which for some reason can still have CIGARs) because the ref context is null.		2012-08-29 15:01:11 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Changing the commenting style in the BQSR	2012-08-29 11:27:45 -04:00
public	Don't try to left align indels in unmapped reads (which for some reason can still have CIGARs) because the ref context is null.	2012-08-29 15:01:11 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00