aaron ce08f5f0c3 Removed some unused variables, fixed some javadoc. The usual. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1211 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-09 22:10:22 +00:00
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gatk	Removed some unused variables, fixed some javadoc. The usual.	2009-07-09 22:10:22 +00:00
playground	Refactoring of the traversal engine base class, I removed a lot of old code.	2009-07-09 21:57:00 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	Refactoring of the traversal engine base class, I removed a lot of old code.	2009-07-09 21:57:00 +00:00