Christopher Hartl cde224746f Bait Redesign supports baits that overlap, by picking only the start of intervals. ... CalibrateGenotypeLikelihoods supports using an external VCF as input for genotype likelihoods. Currently can be a per-sample VCF, but has un-implemented methods for allowing a read-group VCF to be used. Removed the old constrained genotyping code from UGE -- the trellis calculated is exactly the same as that done in the MLE AC estimate; so we should just re-use that one.		2012-01-17 13:51:05 -05:00
..
config	…
src	Bait Redesign supports baits that overlap, by picking only the start of intervals.	2012-01-17 13:51:05 -05:00
test	Better location for the downsampling of reads in PrintReads	2012-01-14 14:06:09 -05:00