cdb1fa1105
-Allow the default S3 put timeout of 30 seconds for GATKRunReports to be overridden via a constructor argument, and use a timeout of 300 seconds for tests. The timeout remains 30 seconds in all other cases. -Change integration tests that themselves dispatch farm jobs into pipeline tests. Necessary because some farm nodes are not set up as submit hosts. Pipeline tests are still run directly on gsa4. -Bump up the timeout for the MaxRuntimeIntegrationTest even more (was still occasionally failing on the farm!) |
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