gatk3的最后一个经典版本3.8

Mark DePristo cda8d944b7 Bugfixes for BCF with VQSR ... -- Old version converted doubles directly from strings. New version uses VariantContext getAttributeAsDouble() that looks at the values directly to determine how to convert from Object to Double (via Double.valueOf, (Double), or (Double)(Integer)). -- getAttributeAsDouble() is now smart in converting integers to doubles as needed -- Removed unnecessary logging info in BCF2Codec -- Added integration tests to ensure that VQSR works end-to-end with BCF2 using sites version of the file khalid sent to me -- Added vqsr.bcf_test.snps.unfiltered.bcf file for this integration test		2012-08-07 17:22:39 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Update -maxAlleles argument in integration tests	2012-08-06 22:48:04 -04:00
public	Bugfixes for BCF with VQSR	2012-08-07 17:22:39 -04:00
settings	Removed Categories.	2012-07-25 13:46:24 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Remove reference dependence in BCF2Codec	2012-07-25 08:56:38 -04:00
ivy.xml	V1 of tool to visualize the quality score information in the context covariates	2012-07-31 08:11:02 -04:00