gatk-3.8/public/java
Mauricio Carneiro cd842b650e Optimizing DiagnoseTargets
* Fixed output format to get a valid vcf
   * Optimzed the per sample pileup routine O(n^2) => O(n) pileup for samples
   * Added support to overlapping intervals
   * Removed expand target functionality (for now)
   * Removed total depth (pointless metric)
2012-04-10 17:43:59 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Optimizing DiagnoseTargets 2012-04-10 17:43:59 -04:00
test Fixing ActivityProfile unit test. 2012-04-10 15:28:27 -04:00