gatk3的最后一个经典版本3.8

Mauricio Carneiro cd842b650e Optimizing DiagnoseTargets ... * Fixed output format to get a valid vcf * Optimzed the per sample pileup routine O(n^2) => O(n) pileup for samples * Added support to overlapping intervals * Removed expand target functionality (for now) * Removed total depth (pointless metric)		2012-04-10 17:43:59 -04:00
public	Optimizing DiagnoseTargets	2012-04-10 17:43:59 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	Updated license year	2012-03-27 14:32:02 -04:00
build.xml	Added function to get bases from the current base forward in the window in ReferenceContext	2012-04-06 16:07:46 -04:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00