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Mauricio Carneiro cd68cc239b Added knuth-shuffle (KS) and randomSubset using KS to MathUtils 
* Knuth-shuffle is a simple, yet effective array permutator (hope this is good english).
         * added a simple randomSubset that returns a random subset without repeats of any given array with the same probability for every permutation.
         * added unit tests to both functions
 		2012-01-03 09:29:46 -05:00
..
R Protect ourselves when iteration is present but there's only a single iteration in queueJobReport.R 2011-12-19 10:08:38 -05:00
c Reinitialize random seed in the bwa bindings from the fixed seed stored in the 2011-07-22 13:41:53 -04:00
chainFiles Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
doc Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
java Added knuth-shuffle (KS) and randomSubset using KS to MathUtils 2012-01-03 09:29:46 -05:00
packages Revved Picard to incorporate tfennell's AsyncSAMFileWriter. 2011-12-06 10:37:42 -05:00
perl Update to the bindings for liftOverVCF.pl (to -V from -B) 2011-09-15 15:33:09 -04:00
scala Updating the MD5s 2011-12-21 15:14:05 -05:00
testdata Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00