41d57b7139
- Eliminate reduncancy of filter application. - Track filter metrics per-shard to facitate per merging. - Flatten counting iterator hierarchy for easier debugging. - Rename Reads class to ReadProperties and track it outside of the Sting iterators. Note: because shards are currently tied so closely to reads and not the merged triplet of <reads,ref,RODs>, the metrics classes are managed by the SAMDataSource when they should be managed by something more general. For now, we're hacking the reads data source to manage the metrics; in the future, something more general should manage the metrics classes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4015 348d0f76-0448-11de-a6fe-93d51630548a |
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| .. | ||
| arguments | ||
| contexts/variantcontext | ||
| datasources | ||
| executive | ||
| filters | ||
| io | ||
| iterators | ||
| refdata | ||
| traversals | ||
| walkers | ||