carneiro 55e5971b3b this is a oneoff script to clean the papuans and test TargetCreator and IndelRealigner with scatter gathering. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5457 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-17 17:09:53 +00:00
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dataProcessing.scala	join all per-lane Bams before doing target realigning and indel cleaning.	2011-03-14 16:11:03 +00:00
justClean.scala	this is a oneoff script to clean the papuans and test TargetCreator and IndelRealigner with scatter gathering.	2011-03-17 17:09:53 +00:00
pbCalling.scala	Data Processing Pipeline: local indel realignment, mark duplicates and BQSR. Done.	2011-02-16 17:22:30 +00:00