Mark DePristo cd2c511c4a GCF improvements ... -- Support for streaming VCF writing via the VCFWriter interface -- GCF now has a header and a footer. The header is minimal, and contains a forward pointer to the position of the footer in the file. -- Readers now read the header, and then jump to the footer to get the rest of the "header" information -- Version now a field in GCF		2011-09-07 23:28:46 -04:00
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R	Bugfix for singleton runs. Now with histograms where possible	2011-09-06 16:54:01 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	GCF improvements	2011-09-07 23:28:46 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Just cleaning up	2011-09-07 13:32:40 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00