ebanks cd2bfb09ef Change for Tim: invalidate the MD tag (temporarily) if it exists in a read that gets realigned ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4228 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-08 13:59:09 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Change for Tim: invalidate the MD tag (temporarily) if it exists in a read that gets realigned	2010-09-08 13:59:09 +00:00
test	Addition for Tim: recalculate the NM and UQ tags after realignment. Also, don't fix the insert size calculation, since that's done by fix mate information.	2010-09-08 04:02:14 +00:00