gatk-3.8/public/java
Mauricio Carneiro 21ae3ef5f9 Added downsampling support to ReduceReads
* Downsampling is now a parameter to the walker with default value of 0 (no downsampling)
    * Downsampling selects reads at random at the variant region window and strives to achieve uniform coverage if possible around the desired downsampling value.
    * Added integration test
2012-01-03 09:29:46 -05:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Added downsampling support to ReduceReads 2012-01-03 09:29:46 -05:00
test Added knuth-shuffle (KS) and randomSubset using KS to MathUtils 2012-01-03 09:29:46 -05:00