Mark DePristo cc8c12b954 Committing a broken version of BaseRecalibration ... -- I'm committing because there's some kind of fundamental problem with the ReadCovariates cache, in that historical data isn't being cleared / computed properly, and I'd rather it fail for a while than leave it in JIRA. -- The integration tests test the -nct with PrintReads to get 1, 2, 4 and the 4 fails. But that's because of this incorrect calculation -- Updating GATKPerformanceOverTime with the new @ClassType annotation		2012-10-25 14:46:35 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Committing a broken version of BaseRecalibration	2012-10-25 14:46:35 -04:00
test	Re-enable tests	2012-10-25 09:37:08 -04:00