Mark DePristo cc8c12b954 Committing a broken version of BaseRecalibration ... -- I'm committing because there's some kind of fundamental problem with the ReadCovariates cache, in that historical data isn't being cleared / computed properly, and I'd rather it fail for a while than leave it in JIRA. -- The integration tests test the -nct with PrintReads to get 1, 2, 4 and the 4 fails. But that's because of this incorrect calculation -- Updating GATKPerformanceOverTime with the new @ClassType annotation		2012-10-25 14:46:35 -04:00
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src/org/broadinstitute/sting	Merge branch 'master' of ssh://gsa2/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-10-25 02:49:54 -04:00
test/org/broadinstitute/sting	Committing a broken version of BaseRecalibration	2012-10-25 14:46:35 -04:00