gatk-3.8/java/test/org/broadinstitute/sting/gatk/walkers/recalibration
rpoplin 7e58d8ed61 CombineVariants now outputs the command line in the VCF header. Added a new hidden argument to VR walkers called --NoByHapMapValidationStatus to turn off the by-hapmap dbsnp rod behavior. Very useful for experimenting with which sets to use as training data.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4307 348d0f76-0448-11de-a6fe-93d51630548a
2010-09-18 16:06:50 +00:00
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RecalibrationWalkersIntegrationTest.java CombineVariants now outputs the command line in the VCF header. Added a new hidden argument to VR walkers called --NoByHapMapValidationStatus to turn off the by-hapmap dbsnp rod behavior. Very useful for experimenting with which sets to use as training data. 2010-09-18 16:06:50 +00:00
RecalibrationWalkersPerformanceTest.java Adding the appropriate DbSNP file to the performance tests so they don't exception out. 2010-09-16 16:30:54 +00:00