bthomas 96cccafb0d Adding a few helper methods for accessing sample metadata, and associated unit tests. These are motivated by discussion with Ryan about how he'll use sample metadata in VariantEvalwalker - hopefully will make it easier for him. Methods are: ... -- getToolkit().subContextFromSampleProperty(): filters a VariantContext to genotypes that come from samples that have a given property value -- getToolkit().getSamplesWithProperty(): gets all samples with a given property -- getToolkit().getSamplesFromVariantContext(): sample objects that are referenced by name in a VariantContext git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4361 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-28 02:16:25 +00:00
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providers	Removed cases where various toolkit functions were accessing GenomeAnalysisEngine.instance.	2010-09-25 02:49:30 +00:00
sample	Adding a few helper methods for accessing sample metadata, and associated unit tests. These are motivated by discussion with Ryan about how he'll use sample metadata in VariantEvalwalker - hopefully will make it easier for him. Methods are:	2010-09-28 02:16:25 +00:00
shards	Removed cases where various toolkit functions were accessing GenomeAnalysisEngine.instance.	2010-09-25 02:49:30 +00:00
simpleDataSources	Removed cases where various toolkit functions were accessing GenomeAnalysisEngine.instance.	2010-09-25 02:49:30 +00:00