gatk3的最后一个经典版本3.8

David Roazen cb84a6473f Downsampling: experimental engine integration ... -Off by default; engine fork isolates new code paths from old code paths, so no integration tests change yet -Experimental implementation is currently BROKEN due to a serious issue involving file spans. No one can/should use the experimental features until I've patched this issue. -There are temporarily two independent versions of LocusIteratorByState. Anyone changing one version should port the change to the other (if possible), and anyone adding unit tests for one version should add the same unit tests for the other (again, if possible). This situation will hopefully be extremely temporary, and last only until the experimental implementation is proven.		2012-09-06 15:03:27 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Downsampling: experimental engine integration	2012-09-06 15:03:27 -04:00
public	Downsampling: experimental engine integration	2012-09-06 15:03:27 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	More memory for gatkdocs and extracthelp targets	2012-09-05 15:45:22 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00