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gatk-3.8/public/java/src/org/broadinstitute/sting/commandline
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Mark DePristo 2007d2fcad Better documentation for default value fields 
-- DocString function for types that create default outputs "stdout"
-- RodBinding now creates a makeUnbound default value automatically for you if your RodBinding isn't required
-- Removed warning about sparse help from TextFormattingUtils
 		2011-08-10 22:16:22 -04:00
..
Argument.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
ArgumentCollection.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentDefinition.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentDefinitionGroup.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
ArgumentDefinitions.java Fix improper detection of command-line arguments with missing values. 2011-07-25 13:20:00 -04:00
ArgumentException.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentIOType.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentMatch.java Fix improper detection of command-line arguments with missing values. 2011-07-25 13:20:00 -04:00
ArgumentMatches.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentSource.java Better documentation for default value fields 2011-08-10 22:16:22 -04:00
ArgumentTypeDescriptor.java Better documentation for default value fields 2011-08-10 22:16:22 -04:00
ClassType.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
CommandLineProgram.java Completely hacked together version of a FreeMarker + javadoc + custom doclet walker documentation generator 2011-07-21 00:18:07 -04:00
CommandLineUtils.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
EnumerationArgumentDefault.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Gather.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Gatherer.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Hidden.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Input.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
MissingArgumentValueException.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
Output.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ParsingEngine.java CombineVariants with new RodBinding. Bugfix 2011-08-07 20:16:51 -04:00
ParsingMethod.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
RodBinding.java Contracts and documentation for some of RefMetaDataTracker 2011-08-03 13:34:20 -04:00
Tags.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
package-info.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00