gatk-3.8/java
droazen cb3e8aec5e Modified the buildfile and help extractor doclet so that help text is only
extracted from source files that have been modified since the help resource
file was last generated. This significantly speeds up builds where only a few 
source files have been modified, at the expense of making clean builds take 
slightly longer. Here's some performance data gathered by testing the old and 
new versions of extracthelp in isolation and averaging across 10 runs:
old extracthelp, 1 modified source file: 20.1 seconds
new extracthelp, 1 modified source file: 7.2 seconds <-- woohoo! :)
old extracthelp, clean build: 17.8 seconds
new extracthelp, clean build: 20.5 seconds


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5590 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-07 18:40:53 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Modified the buildfile and help extractor doclet so that help text is only 2011-04-07 18:40:53 +00:00
test As I threatened yesterday, I've moved the various and disparate randomization code out of the walkers. Now they all (except VQSRv1, whose days are numbered anyways) use a static generator available in the engine itself. Please use this from now on. The seed is reset before every individual integration test is run. I think there may still be an issue with the IndelRealigner but I need to confirm with the commit to see what testNG does. Integration tests are already broken anyways, so no big deal. 2011-04-07 17:03:48 +00:00