ebanks cb31d5a0ab VariantFiltration now outputs VCF. Important changes: ... 1. VariantsToVCF can now be called statically to output VCF for a single ROD instance; this is temporary until we have a VCF ROD. 2. VariantFiltration now outputs only 2 files, both mandatory: all variants that pass filters in geli text, and all variants in VCF. If there are any problems, go find Aaron. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1569 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-09 20:04:32 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	VariantFiltration now outputs VCF. Important changes:	2009-09-09 20:04:32 +00:00
test/org/broadinstitute/sting	Adding cleaner test	2009-09-09 16:05:56 +00:00