Mauricio Carneiro caebc88e9a Consensus mode and new RodBinding framework. ... The DPP was not using the parameter correctly. It didn't matter for the default option (which is the only one we have been testing) but it would not work for knowns only or smith waterman. It is fixed now. It now complies with the new rod binding framework.		2011-08-22 18:03:39 -04:00
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R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Merge branch 'rodTesting'	2011-08-22 17:43:47 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Consensus mode and new RodBinding framework.	2011-08-22 18:03:39 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00