hanna 3d7575bbb8 Oops...omitted walker.initialize(). ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@504 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-23 17:35:28 +00:00
..
dataSources	Temporary workaround for samtools index bug: there seems to be an off-by-one error. Will file bug report.	2009-04-17 23:14:41 +00:00
executive	Oops...omitted walker.initialize().	2009-04-23 17:35:28 +00:00
iterators	fixed the case when you're not seeking, it didn't initalize	2009-04-16 22:16:03 +00:00
refdata	updated interface	2009-04-21 21:07:20 +00:00
traversals	TraverseByLoci / TraverseByLociByReference suffered from the same sam-triggered off-by-one (?) bug as TraverseByReference; it was just less obvious here because these versions don't shard.	2009-04-22 15:48:20 +00:00
walkers	Make PrintLocusContextWalker less verbose.	2009-04-22 18:28:02 +00:00
GenomeAnalysisTK.java	trivial checking / flagging issues to enable testing of merging iterator performance	2009-04-17 03:11:59 +00:00
LocusContext.java	Added lots of assertions to check for problems.	2009-04-14 00:55:19 +00:00
WalkerManager.java	Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.	2009-03-30 23:20:55 +00:00